AdvOL Student Seminars and Defences
Asma Paracha, December 12, 2017, 15:30-16:00, ITB 201
Speaker:   Asma Paracha

Title:  Lyndon factors and periodicities in strings
AdvOL Optimization Seminars
Alexander Rosa, December 12, 2017, 16:30-17:30, ITB 201
Speaker:   Alexander Rosa
Department of Mathematics & Statistics
McMaster University

Title:  Reaction graphs of combinatorial configurations
Fields Institute Industrial Optimization Seminar, November 14, 2017
Speakers:   Christopher Swartz (McMaster University)
Jesus Flores-Carrillo (Praxair)

On the first Tuesday of each month, the Industrial Optimization Seminar is held at the Fields Institute. See the seminar series website for further information.
Home arrow Seminars arrow Invited seminars arrow Brian Golding, March 18, 2014, 16:30-17:30, ITB 201
Friday, 24 November 2017
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Brian Golding, March 18, 2014, 16:30-17:30, ITB 201
Speaker:   Brian Golding
Department of Biology
McMaster University

Title:  An exploration of topics in sequence analysis

The talk is a broad overview of different projects that my group has worked on in the past year. The projects, chosen to provide a flavour of the contemporary research in bioinformatics, include:
  • identifying spanning sets of oligos, a project on the best way to find short DNA sequences that can be used to mark and measure gene presence,
  • Identifying species from their DNA; this is part of a much larger initiative called the “Barcode of Life” and is now commonly used at a coarser level in environmental metagenomics,
  • determining functional regions from protein sequences; this research makes use of phylogenetic HMMs to detect sequence conservation, and
  • examining mutations in DNA sequences where we are examining the effects of low complexity sequences on complete protein sequences.
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